MusiJ: an ImageJ plugin for video nanoscopy

SlideJ: An ImageJ plugin for automated processing of whole slide images

The digital slide, or Whole Slide Image, is a digital image, acquired with specific scanners, that represents a complete tissue sample or cytological specimen at microscopic level. While Whole Slide image analysis is recognized among the most interesting opportunities, the typical size of such images-up to Gpixels- can be very demanding in terms of memory requirements. Thus, while algorithms an...

ImageJ-Plugin zur semi-automatisierten Extraktion von morphologischen Blattmerkmalen

Die Auswertung von morphologischen Eigenschaften von Blättern ist eine bewährte Methode zur Bestimmung von Pflanzen. Der hier vorgestellte Ansatz beschreibt ein semi-automatisiertes PlugIn für ImageJ, das mit Methoden der computergestützten Bilderkennung einige Blattmerkmale wie Innenwinkel der Hauptadern des Blattes in einen Feature-Vektor extrahiert und für eine anschließende Klassifizierung ...

ColonyArea: An ImageJ Plugin to Automatically Quantify Colony Formation in Clonogenic Assays

The clonogenic or colony formation assay is a widely used method to study the number and size of cancer cell colonies that remain after irradiation or cytotoxic agent administration and serves as a measure for the anti-proliferative effect of these treatments. Alternatively, this assay is used to quantitate the transforming potential of cancer associated genes and chemical agents. Therefore, th...

Point Spread Function Estimation Tool, Alpha Version A Plugin for ImageJ

NeuriteTracer: a novel ImageJ plugin for automated quantification of neurite outgrowth.

In vitro assays to measure neuronal growth are a fundamental tool used by many neurobiologists studying neuronal development and regeneration. The quantification of these assays requires accurate measurements of neurite length and neuronal cell numbers in neuronal cultures. Generally, these measurements are obtained through labor-intensive manual or semi-manual tracing of images. To automate th...